Jannes Nys

Working on

Senior researcher at ETH Zürich

About

I'm a research scientist with around a decade of experience designing machine learning algorithms and numerical methods for hard scientific problems. My work sits at the intersection of artificial intelligence, quantum computing, and high-performance computing — I build neural architectures and algorithms for complex, structured data, and I scale them across multi-GPU clusters. I move between modern machine learning (generative models, graph neural networks, attention, LLM agents) and quantum science (variational methods, tensor networks, Monte Carlo, quantum algorithms), and I like problems where the two meet.

I'm currently a senior researcher at ETH Zürich. Before that I was a postdoctoral researcher at EPFL (2021–2024), a researcher and group leader at IMEC and the University of Antwerp (2020–2021), and a postdoctoral fellow at Ghent University (2019–2020), where I also did my PhD in theoretical physics (2014–2018). Alongside the PhD I picked up an MSc in Artificial Intelligence from KU Leuven (2020, summa cum laude, part-time), on top of an MSc and BSc in Physics from Ghent (summa cum laude, top of class).

Outside academia I've been an entrepreneur: I co-founded Boltzmann, an ML R&D startup, served as scientific advisor to the biotech company BioStrand (later acquired by IPA), and have delivered machine-learning R&D for clients in fintech, biotech, retail, and accounting. I'm currently based in Zürich.

Research

A non-exhaustive tour of what I work on. Linked papers below are representative; the full list lives on the publications page.

AI for science & Scientific machine learning

I design neural architectures — equivariant graph neural networks, attention-based models, and physics-informed networks — for challenging scientific problems. Recent threads include generative models trained with optimal-transport ideas (Wasserstein Quantum Monte Carlo, NeurIPS 2023), deep learning for time-dependent many-body dynamics (Nature Communications 2024), message-passing wave functions for the homogeneous electron gas (PRB 2024), higher-order optimization techniques for neural wave functions (arXiv 2025), and LLM-based multi-agent systems for automating parts of the scientific discovery loop.

Quantum simulation & quantum computing

I design quantum algorithms for digital and analog devices, with three current threads. For simulating fermionic matter and 2D materials, I work on Clifford-friendly stabilizer methods for fermion dynamics with reduced non-Clifford gate counts (with I. Tavernelli's group at IBM Research, arXiv 2025), quantum circuits for local fermion-to-qubit mappings (Quantum 2023), and generalized fermion-to-qudit encodings (Phys. Rev. A 2025). For quantum dynamics, I develop variational time-evolution algorithms that bypass the quantum geometric tensor (with J. Gacon, Phys. Rev. Research 2024). And for validating quantum devices, I build ML methods that recover hard-to-measure observables from analog simulators — e.g. predicting topological entanglement entropy on a Rydberg simulator (Nature Physics 2025).

Numerical methods & HPC

Underneath the model design sits a steady focus on scalable numerics and linear algebra: foremost neural networks and deep learning, scaled with JAX and PyTorch on multi-GPU and HPC clusters, and supporting techniques like Monte Carlo, tensor networks, and custom optimization algorithms. I originally cut my teeth on this in industry with TensorFlow at Boltzmann, and now contribute to NetKet, a JAX-based open-source toolbox for many-body quantum systems (SciPost 2022).

Background

Experience

  • 2024 – presentSenior researcher, ETH Zürich
  • 2021 – 2024Postdoctoral researcher, EPFL
  • 2020 – 2021Researcher & group leader, IMEC and University of Antwerp
  • 2019 – 2020Postdoctoral research fellow, Ghent University
  • 2018 – 2020Scientific advisor (part-time), BioStrand / BioClue (acquired by IPA)
  • 2018 – 2019Co-founder & head of machine learning, Boltzmann

Education

  • 2014 – 2018PhD in Physics, Ghent University
  • 2015 – 2020MSc in Artificial Intelligence, KU Leuven (summa cum laude, part-time)
  • 2009 – 2014MSc & BSc in Physics, Ghent University (summa cum laude, top of class)

A full CV is available on request — please email me.